PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00036g00412.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 310aa    MW: 35419.9 Da    PI: 8.2054
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00036g00412.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.83.2e-12173198126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               y   +C+++ +tG+C yGd CkF+H+
  Peaxi162Scf00036g00412.1 173 YQPDICKDYKETGYCGYGDACKFMHD 198
                               67789********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.01E-9171203IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7172199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577172200IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-10173198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-12173203IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.7E-13233291IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139201.8E-8249291No hitNo description
SuperFamilySSF578501.93E-12249292No hitNo description
SMARTSM001846.5E-4250287IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.321250288IPR001841Zinc finger, RING-type
CDDcd001621.69E-7250291No hitNo description
PROSITE patternPS005180265274IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
CNFLKNPSKG KNIRKRPTIE QGENEDPEGE SSVVYTKKKA AVADNKLHFS TRPLKSHKPT  60
EPNVDSKALF HFESSKKIQI QNDSRATATL ETETEFFKDA RAIRERALKL AEEALKGKSK  120
TSGDEKLYKG MNQYTDYKAG LRREHAISNE KAGGAHGPLR ASAHIRVSAR FDYQPDICKD  180
YKETGYCGYG DACKFMHDRG DYKSGWQLEK EWDEAEKERK RKLAMGMLDE DDEDAEKSDE  240
DDDDSLPFAC FICRQPFVDP VVAKCKHYFC EHCALKHHAK NKKCFVCNQP TLGIFNTAFE  300
IRKRMVDQGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2csy_A1e-192463091477Zinc finger protein 183-like 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609000.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_016502602.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-151C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLM1B2E50.0M1B2E5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000355220.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-144C3H family protein